Goto

Collaborating Authors

 gastric cancer


CoAtNeXt:An Attention-Enhanced ConvNeXtV2-Transformer Hybrid Model for Gastric Tissue Classification

Yurdakul, Mustafa, Tasdemir, Sakir

arXiv.org Artificial Intelligence

Background and objective Early diagnosis of gastric diseases is crucial to prevent fatal outcomes. Although histopathologic examination remains the diagnostic gold standard, it is performed entirely manually, making evaluations labor-intensive and prone to variability among pathologists. Critical findings may be missed, and lack of standard procedures reduces consistency. These limitations highlight the need for automated, reliable, and efficient methods for gastric tissue analysis. Methods In this study, a novel hybrid model named CoAtNeXt was proposed for the classification of gastric tissue images. The model is built upon the CoAtNet architecture by replacing its MBConv layers with enhanced ConvNeXtV2 blocks. Additionally, the Convolutional Block Attention Module (CBAM) is integrated to improve local feature extraction through channel and spatial attention mechanisms. The architecture was scaled to achieve a balance between computational efficiency and classification performance. CoAtNeXt was evaluated on two publicly available datasets, HMU-GC-HE-30K for eight-class classification and GasHisSDB for binary classification, and was compared against 10 Convolutional Neural Networks (CNNs) and ten Vision Transformer (ViT) models. Results CoAtNeXt achieved 96.47% accuracy, 96.60% precision, 96.47% recall, 96.45% F1 score, and 99.89% AUC on HMU-GC-HE-30K. On GasHisSDB, it reached 98.29% accuracy, 98.07% precision, 98.41% recall, 98.23% F1 score, and 99.90% AUC. It outperformed all CNN and ViT models tested and surpassed previous studies in the literature. Conclusion Experimental results show that CoAtNeXt is a robust architecture for histopathological classification of gastric tissue images, providing performance on binary and multiclass. Its highlights its potential to assist pathologists by enhancing diagnostic accuracy and reducing workload.


Utilizing the RAIN method and Graph SAGE Model to Identify Effective Drug Combinations for Gastric Neoplasm Treatment

Pirasteh, S. Z., Kiaei, Ali A., Bush, Mahnaz, Moghadam, Sabra, Aghaei, Raha, Sadeghigol, Behnaz

arXiv.org Artificial Intelligence

Background: Gastric neoplasm, primarily adenocarcinoma, is an aggressive cancer with high mortality, often diagnosed late, leading to complications like metastasis. Effective drug combinations are vital to address disease heterogeneity, enhance efficacy, reduce resistance, and improve patient outcomes. Methods: The RAIN method integrated Graph SAGE to propose drug combinations, using a graph model with p-value-weighted edges connecting drugs, genes, and proteins. NLP and systematic literature review (PubMed, Scopus, etc.) validated proposed drugs, followed by network meta-analysis to assess efficacy, implemented in Python. Results: Oxaliplatin, fluorouracil, and trastuzumab were identified as effective, supported by 61 studies. Fluorouracil alone had a p-value of 0.0229, improving to 0.0099 with trastuzumab, and 0.0069 for the triple combination, indicating superior efficacy. Conclusion: The RAIN method, combining AI and network meta-analysis, effectively identifies optimal drug combinations for gastric neoplasm, offering a promising strategy to enhance treatment outcomes and guide health policy.


Multivariate Analysis of Gut Microbiota Composition and Prevalence of Gastric Cancer

Shankarnarayanan, Aadhith, Gangopadhyay, Dheeman, Alzaatreh, Ayman

arXiv.org Artificial Intelligence

The global surge in the cases of gastric cancer has prompted an investigation into the potential of gut microbiota as a predictive marker for the disease. The alterations in gut diversity are suspected to be associated with an elevated risk of gastric cancer. This paper delves into finding the correlation between gut microbiota and gastric cancer, focusing on patients who have undergone total and subtotal gastrectomy. Utilizing data mining and statistical learning methods, an analysis was conducted on 16S-RNA sequenced genes obtained from 96 participants with the aim of identifying specific genera of gut microbiota associated with gastric cancer. The study reveals several prominent bacterial genera that could potentially serve as biomarkers assessing the risk of gastric cancer. These findings offer a pathway for early risk assessment and precautionary measures in the diagnosis of gastric cancer. The intricate mechanisms through which these gut microbiotas influence gastric cancer progression warrant further investigation. This research significantly aims to contribute to the growing understanding of the gut-cancer axis and its implications in disease prediction and prevention.


Robot-Enabled Machine Learning-Based Diagnosis of Gastric Cancer Polyps Using Partial Surface Tactile Imaging

Kapuria, Siddhartha, Bonyun, Jeff, Kulkarni, Yash, Ikoma, Naruhiko, Chinchali, Sandeep, Alambeigi, Farshid

arXiv.org Artificial Intelligence

Abstract-- In this paper, to collectively address the existing limitations on endoscopic diagnosis of Advanced Gastric Cancer (AGC) Tumors, for the first time, we propose (i) utilization and evaluation of our recently developed Vision-based Tactile Sensor (VTS), and (ii) a complementary Machine Learning (ML) algorithm for classifying tumors using their textural features. Leveraging a seven DoF robotic manipulator and unique custom-designed and additively-manufactured realistic AGC tumor phantoms, we demonstrated the advantages of automated data collection using the VTS addressing the problem of data scarcity and biases encountered in traditional ML-based approaches. Our synthetic-data-trained ML model was successfully evaluated and compared with traditional ML models utilizing various statistical metrics even under mixed morphological characteristics and partial sensor contact. I. INTRODUCTION Gastric cancer (GC) is the fifth most commonly diagnosed cancer worldwide and the fourth leading cause of cancerrelated mortality [1]. A major contributor to this challenge is the fact that a substantial portion -- up to 62% -- of GC cases are detected at advanced stages, contributing to poorer overall survival rates compared to cases identified at early stages [2].


Cluster-Induced Mask Transformers for Effective Opportunistic Gastric Cancer Screening on Non-contrast CT Scans

Yuan, Mingze, Xia, Yingda, Chen, Xin, Yao, Jiawen, Wang, Junli, Qiu, Mingyan, Dong, Hexin, Zhou, Jingren, Dong, Bin, Lu, Le, Zhang, Li, Liu, Zaiyi, Zhang, Ling

arXiv.org Artificial Intelligence

Gastric cancer is the third leading cause of cancer-related mortality worldwide, but no guideline-recommended screening test exists. Existing methods can be invasive, expensive, and lack sensitivity to identify early-stage gastric cancer. In this study, we explore the feasibility of using a deep learning approach on non-contrast CT scans for gastric cancer detection. We propose a novel cluster-induced Mask Transformer that jointly segments the tumor and classifies abnormality in a multi-task manner. Our model incorporates learnable clusters that encode the texture and shape prototypes of gastric cancer, utilizing self- and cross-attention to interact with convolutional features. In our experiments, the proposed method achieves a sensitivity of 85.0% and specificity of 92.6% for detecting gastric tumors on a hold-out test set consisting of 100 patients with cancer and 148 normal. In comparison, two radiologists have an average sensitivity of 73.5% and specificity of 84.3%. We also obtain a specificity of 97.7% on an external test set with 903 normal cases. Our approach performs comparably to established state-of-the-art gastric cancer screening tools like blood testing and endoscopy, while also being more sensitive in detecting early-stage cancer. This demonstrates the potential of our approach as a novel, non-invasive, low-cost, and accurate method for opportunistic gastric cancer screening.


Machine Learning Approach for Cancer Entities Association and Classification

Jeyakodi, G., Pal, Arkadeep, Gupta, Debapratim, Sarukeswari, K., Amouda, V.

arXiv.org Artificial Intelligence

As numerous biomedical research articles are published regularly, adding knowledge to the accumulated literature on different diseases, such as cancer, neurodegenerative diseases, and hereditary diseases. One of the leading causes of global mortality disease is cancer due to various reasons such as lifestyle habits, radiation exposure, viral infections, and tobacco consumption [1] [2]. These reasons ultimately make some genetic change in a cell of tissue which causes it to become cancerous. Due to the top priority given to cancer research compared to other human diseases, enormous articles were published [3] [4] in a short period [5]. It can serve as a relevant source for cancer knowledge discovery in different fields of diagnostics, application of drugs, genetic association, prevention, and treatment. An automate downloading of articles and extraction of related entities will advance the progression of the research faster. Natural Language Processing (NLP) helps in communicating computers with humans in their language and converts the unstructured data into structured data to improve the accuracy of text mining. NLP function guides to understanding the human query language to discover knowledge from literature without much manual effort [6]. Named Entity Recognition (NER) and text classification is used mainly for text mining [7].


propnet: Propagating 2D Annotation to 3D Segmentation for Gastric Tumors on CT Scans

Chen, Zifan, Li, Jiazheng, Zhao, Jie, Liu, Yiting, Li, Hongfeng, Dong, Bin, Tang, Lei, Zhang, Li

arXiv.org Artificial Intelligence

**Background:** Accurate 3D CT scan segmentation of gastric tumors is pivotal for diagnosis and treatment. The challenges lie in the irregular shapes, blurred boundaries of tumors, and the inefficiency of existing methods. **Purpose:** We conducted a study to introduce a model, utilizing human-guided knowledge and unique modules, to address the challenges of 3D tumor segmentation. **Methods:** We developed the PropNet framework, propagating radiologists' knowledge from 2D annotations to the entire 3D space. This model consists of a proposing stage for coarse segmentation and a refining stage for improved segmentation, using two-way branches for enhanced performance and an up-down strategy for efficiency. **Results:** With 98 patient scans for training and 30 for validation, our method achieves a significant agreement with manual annotation (Dice of 0.803) and improves efficiency. The performance is comparable in different scenarios and with various radiologists' annotations (Dice between 0.785 and 0.803). Moreover, the model shows improved prognostic prediction performance (C-index of 0.620 vs. 0.576) on an independent validation set of 42 patients with advanced gastric cancer. **Conclusions:** Our model generates accurate tumor segmentation efficiently and stably, improving prognostic performance and reducing high-throughput image reading workload. This model can accelerate the quantitative analysis of gastric tumors and enhance downstream task performance.


Machine learning: A non-invasive prediction method for gastric cancer based on a survey of lifestyle behaviors

#artificialintelligence

Gastric cancer remains an enormous threat to human health. It is extremely significant to make a clear diagnosis and timely treatment of gastrointestinal tumors. The traditional diagnosis method (endoscope, surgery, and pathological tissue extraction) of gastric cancer is usually invasive, expensive, and time-consuming. The machine learning method is fast and low-cost, which breaks through the limitations of the traditional methods as we can apply the machine learning method to diagnose gastric cancer. This work aims to construct a cheap, non-invasive, rapid, and high-precision gastric cancer diagnostic model using personal behavioral lifestyles and non-invasive characteristics. A retrospective study was implemented on 3,630 participants. The developed models (extreme gradient boosting, decision tree, random forest, and logistic regression) were evaluated by cross-validation and the generalization ability in our test set. We found that the model developed using fingerprints based on the extreme gradient boosting (XGBoost) algorithm produced better results compared with the other models. The overall accuracy of which test set was 85.7%, AUC was 89.6%, sensitivity 78.7%, specificity 76.9%, and positive predictive values 73.8%, verifying that the proposed model has significant medical value and good application prospects.


AI and Genomics Predict Cancer Patient Treatment Responses

#artificialintelligence

Not all cancer patients benefit from chemotherapy or immunotherapy. Having a way to predict patient responses to various cancer treatment options may help improve outcomes. A new study published in Nature Communications shows how a combination of artificial intelligence (AI) machine learning with genomic sequencing may predict survival and responses to cancer treatments for stomach cancer. "There are currently few predictive biomarkers to guide treatment choices for gastric cancer patients," wrote the researchers affiliated with the Mayo Clinic, the Cleveland Clinic, Yonsei University College of Medicine, Seoul St. Mary's Hospital, and the University of Texas Southwestern Medical Center. Stomach cancer, also known as gastric cancer, is the fourth leading cause of cancer deaths globally and the fifth most common according to 2020 statistics from Global Cancer Statistics (GLOBOCAN).


Prediction of Submucosal Invasion for Gastric Neoplasms in Endoscopic Images Using Deep-Learning – Digital Health and Patient Safety Platform

#artificialintelligence

Endoscopic resection is recommended for gastric neoplasms confined to mucosa or superficial submucosa. The determination of invasion depth is based on gross morphology assessed in endoscopic images, or on endoscopic ultrasound. These methods have limited accuracy and pose an inter-observer variability. Several studies developed deep-learning (DL) algorithms classifying invasion depth of gastric cancers. Nevertheless, these algorithms are intended to be used after definite diagnosis of gastric cancers, which is not always feasible in various gastric neoplasms.